27 Jul
2022
27 Jul
'22
11:40 a.m.
Hi,
I believe the output you see, even though it looks pretty error-y, is
related to the not-so-important `install_egg_info` step that produces some
Python metadata. AFAIK, this error output can be ignored and installation
will continue. Do you have your full cmake and make install output? Perhaps
there are other errors there?
On Wed, 27 Jul 2022, 10:19 Mikael Lindahl, <mickelindahl(a)gmail.com> wrote:
Hi,
I am trying to build NEST on debian 11 with cmake 3.16.9 and conda
python=3.9. I have attached my installation script asswell as the full logs
for make and install steps. ( I run the script with using source to conda
activate will play nice)
During "make install" I get the following message error
-- Set runtime path of
"/home/mikael/git/bgmodel/nest/dist/install/nest-simulator-3.3/lib/python3.9/site-packages/nest/pynestkernel.so"
to
"$ORIGIN/../lib/nest:$ORIGIN/../../lib/nest:$ORIGIN/../../../nest:/home/mikael/opt/anaconda3/envs/nest-3.3/lib"
running install_egg_info
/home/mikael/opt/anaconda3/envs/nest-3.3/lib/python3.9/site-packages/setuptools/command/install.py:34:
SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and
pip and other standards-based tools.
warnings.warn(
running egg_info
creating nest_simulator.egg-info
writing nest_simulator.egg-info/PKG-INFO
writing dependency_links to nest_simulator.egg-info/dependency_links.txt
writing requirements to nest_simulator.egg-info/requires.txt
writing top-level names to nest_simulator.egg-info/top_level.txt
writing manifest file 'nest_simulator.egg-info/SOURCES.txt'
reading manifest file 'nest_simulator.egg-info/SOURCES.txt'
writing manifest file 'nest_simulator.egg-info/SOURCES.txt'
Copying nest_simulator.egg-info to
/home/mikael/git/bgmodel/nest/dist/install/nest-simulator-3.3/lib/python3.9/site-packages/nest_simulator-3.3-py3.9.egg-info
Traceback (most recent call last):
File "<string>", line 1, in <module>
File
"/home/mikael/opt/anaconda3/envs/nest-3.3/lib/python3.9/site-packages/pkg_resources/__init__.py",
line 477, in get_distribution
dist = get_provider(dist)
File
"/home/mikael/opt/anaconda3/envs/nest-3.3/lib/python3.9/site-packages/pkg_resources/__init__.py",
line 353, in get_provider
return working_set.find(moduleOrReq) or require(str(moduleOrReq))[0]
File
"/home/mikael/opt/anaconda3/envs/nest-3.3/lib/python3.9/site-packages/pkg_resources/__init__.py",
line 897, in require
needed = self.resolve(parse_requirements(requirements))
File
"/home/mikael/opt/anaconda3/envs/nest-3.3/lib/python3.9/site-packages/pkg_resources/__init__.py",
line 783, in resolve
raise DistributionNotFound(req, requirers)
pkg_resources.DistributionNotFound: The 'nest-simulator' distribution was
not found and is required by the application
And for make installcheck i get this error
Scanning dependencies of target installcheck
Executing NEST's testsuite...
make[3]: *** [CMakeFiles/installcheck.dir/build.make:61:
CMakeFiles/installcheck] Error 1
make[2]: *** [CMakeFiles/Makefile2:524: CMakeFiles/installcheck.dir/all]
Error 2
make[1]: *** [CMakeFiles/Makefile2:531: CMakeFiles/installcheck.dir/rule]
Error 2
make: *** [Makefile:178: installcheck] Error 2
It took 160 seconds
Anyone who knows how to solve this?
/Mikael
--
Mikael Lindahl Phd
Phone: +46735119429
Email: m <lindahlm@csc.kth.se>ickelindahl@gmail.com
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