Hi,
I am trying to build NEST on debian 11 with cmake 3.16.9 and conda python=3.9. I have attached my installation script asswell as the full logs for make and install steps. ( I run the script with using source to conda activate will play nice)
During "make install" I get the following message error
-- Set runtime path of "/home/mikael/git/bgmodel/nest/dist/install/nest-simulator-3.3/lib/python3.9/site-packages/nest/pynestkernel.so" to "$ORIGIN/../lib/nest:$ORIGIN/../../lib/nest:$ORIGIN/../../../nest:/home/mikael/opt/anaconda3/envs/nest-3.3/lib"
running install_egg_info
/home/mikael/opt/anaconda3/envs/nest-3.3/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running egg_info
creating nest_simulator.egg-info
writing nest_simulator.egg-info/PKG-INFO
writing dependency_links to nest_simulator.egg-info/dependency_links.txt
writing requirements to nest_simulator.egg-info/requires.txt
writing top-level names to nest_simulator.egg-info/top_level.txt
writing manifest file 'nest_simulator.egg-info/SOURCES.txt'
reading manifest file 'nest_simulator.egg-info/SOURCES.txt'
writing manifest file 'nest_simulator.egg-info/SOURCES.txt'
Copying nest_simulator.egg-info to /home/mikael/git/bgmodel/nest/dist/install/nest-simulator-3.3/lib/python3.9/site-packages/nest_simulator-3.3-py3.9.egg-info
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/home/mikael/opt/anaconda3/envs/nest-3.3/lib/python3.9/site-packages/pkg_resources/__init__.py", line 477, in get_distribution
dist = get_provider(dist)
File "/home/mikael/opt/anaconda3/envs/nest-3.3/lib/python3.9/site-packages/pkg_resources/__init__.py", line 353, in get_provider
return working_set.find(moduleOrReq) or require(str(moduleOrReq))[0]
File "/home/mikael/opt/anaconda3/envs/nest-3.3/lib/python3.9/site-packages/pkg_resources/__init__.py", line 897, in require
needed = self.resolve(parse_requirements(requirements))
File "/home/mikael/opt/anaconda3/envs/nest-3.3/lib/python3.9/site-packages/pkg_resources/__init__.py", line 783, in resolve
raise DistributionNotFound(req, requirers)
pkg_resources.DistributionNotFound: The 'nest-simulator' distribution was not found and is required by the application
And for make installcheck i get this error
Scanning dependencies of target installcheck
Executing NEST's testsuite...
make[3]: *** [CMakeFiles/installcheck.dir/build.make:61: CMakeFiles/installcheck] Error 1
make[2]: *** [CMakeFiles/Makefile2:524: CMakeFiles/installcheck.dir/all] Error 2
make[1]: *** [CMakeFiles/Makefile2:531: CMakeFiles/installcheck.dir/rule] Error 2
make: *** [Makefile:178: installcheck] Error 2
It took 160 seconds
Anyone who knows how to solve this?
/Mikael