Hello Remy,
I don't have any numbers of Hill-Tononi vs aeif_cond_exp, but given that Hill-Tononi
has a 16-dimensional and the aeif_cond_exp a 4-dimensional state vector, there will
probably be a noticeable difference.
Part of the simplicity of the aeif_cond_exp is in the synapses, since the model only has a
two synaptic time constants, one excitatory and one inhibitory. Adding NMDA and GABA_B
with different time constant would add at least two dimensions, but probably four as you
probably want different rise and decay constants (you could experiment with the
aeif_cond_{alpha,beta}_multisynapse models).
A crucial question is if want to "lump" the NMDA and GABA_B synapses in the same
way as synapses in NEST generally are lumped: we treat all spikes arriving through the
excitatory synaspe of a model neuron equal (and correspondingly for the inhibitory
synapse). As long as synapse activation is linear, this is unproblematic. But if
activation is non-linear (as may be the case for second-messenger synapses), this may no
longer hold. Then, one would strictly speaking need to treat every incoming synapse
individually, resulting in very large state vectors (O(10^3)) and correspondingly poor
performance.
Best,
Hans Ekkehard
--
Prof. Dr. Hans Ekkehard Plesser
Head, Department of Data Science
Faculty of Science and Technology
Norwegian University of Life Sciences
PO Box 5003, 1432 Aas, Norway
Phone +47 6723 1560
Email hans.ekkehard.plesser(a)nmbu.no
Home
http://arken.nmbu.no/~plesser
On 14/02/2022, 16:02, "cagnol(a)ksvi.mff.cuni.cz" <cagnol(a)ksvi.mff.cuni.cz>
wrote:
Hello,
We would like to use neurons models with NMDA channels in our spiking neuron model.
We're still unsure whether we will use a native neuron model in Nest or whether we
will implement our own one in NESTML. My understanding is that the only model in Nest
which does that is the Hill - Tononi model, which seems rather complex. How fast would you
roughly expect a Hill - Tononi neuron network to run compared to a network made of
aeif_cond_exp neurons?
Do you know by any chance any example of adex NESTML models which implement NMDA and
Gaba_B channels?
Also, one last question not really related to the previous ones: Is there any way to
model synaptic reliability in Nest?
Thanks a lot,
Remy,
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