test failures on nest master@6997cae6c on Fedora 32 with Intel Prallel Studio XE 2020 update 2
6 Oct
2020
6 Oct
'20
2:18 a.m.
Dear all,
I have compiled NEST master@6997cae6c onFedora 32 with both,
1- gcc (10.2.1) and OpenMPI (4.0.4): the default on this distro
2 - Intel Parallel Studio XE update 2 with GSL compiled from source using
the same compiler
using same configuration (-Dwith-mpi=ON, -Dwith-boost=ON) . On Intel,
-Dwith-gsl=${GSL_DIR} was
added to point to the GSL built with the Intel Compiler.
On the gcc configuration, all tests worked fine (I defined
OMPI_MCA_rmaps_base_oversubscribe=1 to
avoid oversubscription error as reported in issue #1758).
On the other hand, on the Intel configuration, several MPI tests have
failed as described in the
attached files. (To allow oversubscription the following variables were
defined: I_MPI_WAIT_MODE=1
and I_MPI_THREAD_YIELD=3)
I report it here as it is probably not directly a NEST code issue, but hope
that someone in the community
could have the answer. If I should submit it as an issue on GitHub, please
let me know.
Attached files:
cmake_command_summary.txt : cmake command invocation and summary
installcheck.log : make installcheck log
reports.tar.gz : reports folder created by make installcheck; it also
contains the instalcheck.log file above
Best,
Nilton
--
Nilton Liuji Kamiji
University of Sao Paulo
Department of Physics, FFCLRP
Laboratory of Neural Systems
Phone: +55 16 3315 3859
16 Oct
16 Oct
9:37 a.m.
Dear Nilton,
this is probably a deep compile configuration issue. Maybe our expert
for the MPI libraries context has an idea what could cause this. I will
contact him and ask if he could have a look at this.
Best,
Dennis
On 06.10.20 02:18, Nilton Liuji Kamiji wrote:
Dear all,
I have compiled NEST master@6997cae6c onFedora 32 with both,
1- gcc (10.2.1) and OpenMPI (4.0.4): the default on this distro
2 - Intel Parallel Studio XE update 2 with GSL compiled from source using
the same compiler
using same configuration (-Dwith-mpi=ON, -Dwith-boost=ON) . On Intel,
-Dwith-gsl=${GSL_DIR} was
added to point to the GSL built with the Intel Compiler.
On the gcc configuration, all tests worked fine (I defined
OMPI_MCA_rmaps_base_oversubscribe=1 to
avoid oversubscription error as reported in issue #1758).
On the other hand, on the Intel configuration, several MPI tests have
failed as described in the
attached files. (To allow oversubscription the following variables were
defined: I_MPI_WAIT_MODE=1
and I_MPI_THREAD_YIELD=3)
I report it here as it is probably not directly a NEST code issue, but hope
that someone in the community
could have the answer. If I should submit it as an issue on GitHub, please
let me know.
Attached files:
cmake_command_summary.txt : cmake command invocation and summary
installcheck.log : make installcheck log
reports.tar.gz : reports folder created by make installcheck; it also
contains the instalcheck.log file above
Best,
Nilton
_______________________________________________
NEST Users mailing list -- users(a)nest-simulator.org
To unsubscribe send an email to users-leave(a)nest-simulator.org
--
Dipl.-Phys. Dennis Terhorst
Coordinator Software Development
Institute of Neuroscience and Medicine (INM-6)
Computational and Systems Neuroscience &
Theoretical Neuroscience,
Institute for Advanced Simulation (IAS-6)
Jülich Research Centre, Member of the Helmholz Association and JARA
52425 Jülich, Germany
Building 15.22 Room 4004
Phone +49 2461 61-85062
Fax +49 2461 61- 9460
d.terhorst(a)fz-juelich.de
-------------------------------------------------------------------------------------
Forschungszentrum Juelich GmbH
52425 Juelich
Sitz der Gesellschaft: Juelich
Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
Vorsitzender des Aufsichtsrats: MinDir Volker Rieke
Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender),
Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt
-------------------------------------------------------------------------------------
5:49 p.m.
Dear Dennis,
Thanks for looking into this.
I will report back if I find any solution, but looking forward to hearing
from the experts as well.
Best,
Nilton
On Fri, Oct 16, 2020 at 4:37 AM Dennis Terhorst <d.terhorst(a)fz-juelich.de>
wrote:
Dear Nilton,
this is probably a deep compile configuration issue. Maybe our expert for
the MPI libraries context has an idea what could cause this. I will contact
him and ask if he could have a look at this.
Best,
Dennis
On 06.10.20 02:18, Nilton Liuji Kamiji wrote:
Dear all,
I have compiled NEST master@6997cae6c onFedora 32 with both,
1- gcc (10.2.1) and OpenMPI (4.0.4): the default on this distro
2 - Intel Parallel Studio XE update 2 with GSL compiled from source using
the same compiler
using same configuration (-Dwith-mpi=ON, -Dwith-boost=ON) . On Intel,
-Dwith-gsl=${GSL_DIR} was
added to point to the GSL built with the Intel Compiler.
On the gcc configuration, all tests worked fine (I defined
OMPI_MCA_rmaps_base_oversubscribe=1 to
avoid oversubscription error as reported in issue #1758).
On the other hand, on the Intel configuration, several MPI tests have
failed as described in the
attached files. (To allow oversubscription the following variables were
defined: I_MPI_WAIT_MODE=1
and I_MPI_THREAD_YIELD=3)
I report it here as it is probably not directly a NEST code issue, but hope
that someone in the community
could have the answer. If I should submit it as an issue on GitHub, please
let me know.
Attached files:
cmake_command_summary.txt : cmake command invocation and summary
installcheck.log : make installcheck log
reports.tar.gz : reports folder created by make installcheck; it also
contains the instalcheck.log file above
Best,
Nilton
_______________________________________________
NEST Users mailing list -- users(a)nest-simulator.org
To unsubscribe send an email to users-leave(a)nest-simulator.org
--
Dipl.-Phys. Dennis Terhorst
Coordinator Software Development
Institute of Neuroscience and Medicine (INM-6)
Computational and Systems Neuroscience &
Theoretical Neuroscience,
Institute for Advanced Simulation (IAS-6)
Jülich Research Centre, Member of the Helmholz Association and JARA
52425 Jülich, Germany
Building 15.22 Room 4004
Phone +49 2461 61-85062
Fax +49 2461 61- 9460d.terhorst(a)fz-juelich.de
-------------------------------------------------------------------------------------
Forschungszentrum Juelich GmbH
52425 Juelich
Sitz der Gesellschaft: Juelich
Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
Vorsitzender des Aufsichtsrats: MinDir Volker Rieke
Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender),
Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt
-------------------------------------------------------------------------------------
_______________________________________________
NEST Users mailing list -- users(a)nest-simulator.org
To unsubscribe send an email to users-leave(a)nest-simulator.org
--
Nilton Liuji Kamiji
University of Sao Paulo
Department of Physics, FFCLRP
Laboratory of Neural Systems
Phone: +55 16 3315 3859
1527
days inactive
1537
days old
2 comments
2 participants
participants (2)
-
Dennis Terhorst -
Nilton Liuji Kamiji