We have encountered the following error:
Traceback (most recent call last):
File "all_v2.py", line 364, in <module>
nest.Simulate(sim_time)
File"/opt/soft/nest-2.18.0/lib64/python3.6/site-packages/nest/ll_api.py",line
246, in stack_checker_func
return f(*args, **kwargs)
File"/opt/soft/nest-2.18.0/lib64/python3.6/site-packages/nest/lib/hl_api_simulation.py",line
66, in Simulate
sr('ms Simulate')
File"/opt/soft/nest-2.18.0/lib64/python3.6/site-packages/nest/ll_api.py",line
132, in catching_sli_run
raise exceptionCls(commandname, message)
nest.ll_api.C++Exception: ('C++Exception in Simulate_d:std::bad_alloc',
'C++Exception', <SLILiteral: Simulate_d>, ':std::bad_alloc')
Could you help to resolve it?
Best regards,Petia Koprinkova-Hristova
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Dear Petia,
this looks a lot like you run out of working memory (RAM) on your machine. You can check
the memory consumption by adding
```python
print('Memory before Simulate():', nest.ll_api.sli_func('memory_thisjob')
```
right before your call `Simulate()`. The printed number is in kiB
I am afraid that we can't do much else for you here.
Best regards,
Jochen!
On 15.01.21 11:07, Petia Koprinkova wrote:
We have encountered the following error:
Traceback (most recent call last):
File "all_v2.py", line 364, in <module>
nest.Simulate(sim_time)
File "/opt/soft/nest-2.18.0/lib64/python3.6/site-packages/nest/ll_api.py", line
246, in stack_checker_func
return f(*args, **kwargs)
File
"/opt/soft/nest-2.18.0/lib64/python3.6/site-packages/nest/lib/hl_api_simulation.py",
line 66, in Simulate
sr('ms Simulate')
File "/opt/soft/nest-2.18.0/lib64/python3.6/site-packages/nest/ll_api.py", line
132, in catching_sli_run
raise exceptionCls(commandname, message)
nest.ll_api.C++Exception: ('C++Exception in Simulate_d: std::bad_alloc',
'C++Exception', <SLILiteral: Simulate_d>, ': std::bad_alloc')
Could you help to resolve it?
Best regards,
Petia Koprinkova-Hristova
_______________________________________________
NEST Users mailing list --
users@nest-simulator.org<mailto:users@nest-simulator.org>
To unsubscribe send an email to
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--
Dr. Jochen Martin Eppler
Phone: +49(2461)61-96653
----------------------------------
Simulation Laboratory Neuroscience
Jülich Supercomputing Centre
Institute for Advanced Simulation
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
Forschungszentrum Juelich GmbH
52425 Juelich
Sitz der Gesellschaft: Juelich
Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
Vorsitzender des Aufsichtsrats: MinDir Volker Rieke
Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender),
Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
Dear Petia,
this looks a lot like you run out of working memory (RAM) on your machine. You can check
the memory consumption by adding
print('Memory before Simulate():', nest.ll_api.sli_func('memory_thisjob')
right before your call Simulate(). The printed number is in kiB
I am afraid that we can’t do much else for you here.
Best regards,
Jochen!
On 15.01.21 11:07, Petia Koprinkova wrote:
We have encountered the following error:
Traceback (most recent call last):
File "all_v2.py", line 364, in <module>
nest.Simulate(sim_time)
File "/opt/soft/nest-2.18.0/lib64/python3.6/site-packages/nest/ll_api.py", line
246, in stack_checker_func
return f(*args, **kwargs)
File
"/opt/soft/nest-2.18.0/lib64/python3.6/site-packages/nest/lib/hl_api_simulation.py",
line 66, in Simulate
sr('ms Simulate')
File "/opt/soft/nest-2.18.0/lib64/python3.6/site-packages/nest/ll_api.py", line
132, in catching_sli_run
raise exceptionCls(commandname, message)
nest.ll_api.C++Exception: ('C++Exception in Simulate_d: std::bad_alloc',
'C++Exception', <SLILiteral: Simulate_d>, ': std::bad_alloc')
Could you help to resolve it?
Best regards,
Petia Koprinkova-Hristova
_______________________________________________
NEST Users mailing list --
users@nest-simulator.org<mailto:users@nest-simulator.org>
To unsubscribe send an email to
users-leave@nest-simulator.org<mailto:users-leave@nest-simulator.org>
--
Dr. Jochen Martin Eppler
Phone: +49(2461)61-96653
----------------------------------
Simulation Laboratory Neuroscience
Jülich Supercomputing Centre
Institute for Advanced Simulation
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
Forschungszentrum Juelich GmbH
52425 Juelich
Sitz der Gesellschaft: Juelich
Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
Vorsitzender des Aufsichtsrats: MinDir Volker Rieke
Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender),
Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
Dear Jochen,
Thank you very much!
This explains a lot... Actually we tried to run NEST simulation with mpi4py... Probably
the problem is that our attempt was to assign it to only one of the processess. The
interesting thing is that we run Simulate in all parallel process, it works.
Best,Petia
On Friday, January 15, 2021, 1:29:03 PM GMT+2, Jochen Martin Eppler
<j.eppler(a)fz-juelich.de> wrote:
Dear Petia,
this looks a lot like you run out of working memory (RAM) on your machine. You can check
the memory consumption by adding
print('Memory before Simulate():', nest.ll_api.sli_func('memory_thisjob')
right before your call Simulate(). The printed number is in kiB
I am afraid that we can’t do much else for you here.
Best regards,
Jochen!
On 15.01.21 11:07, Petia Koprinkova wrote:
We have encountered the following error:
Traceback (most recent call last):
File "all_v2.py", line 364, in <module>
nest.Simulate(sim_time)
File "/opt/soft/nest-2.18.0/lib64/python3.6/site-packages/nest/ll_api.py", line
246, in stack_checker_func
return f(*args, **kwargs)
File
"/opt/soft/nest-2.18.0/lib64/python3.6/site-packages/nest/lib/hl_api_simulation.py",
line 66, in Simulate
sr('ms Simulate')
File "/opt/soft/nest-2.18.0/lib64/python3.6/site-packages/nest/ll_api.py", line
132, in catching_sli_run
raise exceptionCls(commandname, message)
nest.ll_api.C++Exception: ('C++Exception in Simulate_d: std::bad_alloc',
'C++Exception', <SLILiteral: Simulate_d>, ': std::bad_alloc')
Could you help to resolve it?
Best regards,Petia Koprinkova-Hristova
_______________________________________________
NEST Users mailing list -- users(a)nest-simulator.org
To unsubscribe send an email to users-leave(a)nest-simulator.org
--
Dr. Jochen Martin Eppler
Phone: +49(2461)61-96653
----------------------------------
Simulation Laboratory Neuroscience
Jülich Supercomputing Centre
Institute for Advanced Simulation
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
Forschungszentrum Juelich GmbH
52425 Juelich
Sitz der Gesellschaft: Juelich
Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
Vorsitzender des Aufsichtsrats: MinDir Volker Rieke
Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender),
Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
_______________________________________________
NEST Users mailing list -- users(a)nest-simulator.org
To unsubscribe send an email to users-leave(a)nest-simulator.org