13 Jul
2019
13 Jul
'19
11:11 a.m.
At the NEST tutorial in CNS (
https://github.com/AlexVanMeegen/CNS2019_NEST_Tutorial) I have tried NEST
2.18 (2.16 also failed but with different error) using Mac with
Mojave 10.14.1 and anaconda 3
Kind regards
Filip Vercruysse
On Sat, Jul 13, 2019 at 11:07 AM Filip Vercruysse <filipvercruysse(a)gmail.com>
wrote:
(CNS2019_NEST)
Filips-MacBook-Pro:CNS2019_NEST_Tutorial filip$
jupyter-notebook
[I 11:01:50.427 NotebookApp] The port 8888 is already in use, trying
another port.
[I 11:01:50.439 NotebookApp] Serving notebooks from local directory:
/Users/filip/Desktop/Research/Conferences/CNS Barcelona/NEST
tutorial/CNS2019_NEST_Tutorial
[I 11:01:50.439 NotebookApp] The Jupyter Notebook is running at:
[I 11:01:50.439 NotebookApp]
http://localhost:8889/?token=f4b50440467ee8d87607f84e947be0022dbd7aa394a0b4…
[I 11:01:50.439 NotebookApp] Use Control-C to stop this server and shut
down all kernels (twice to skip confirmation).
[C 11:01:50.445 NotebookApp]
To access the notebook, open this file in a browser:
file:///Users/filip/Library/Jupyter/runtime/nbserver-31158-open.html
Or copy and paste one of these URLs:
http://localhost:8889/?token=f4b50440467ee8d87607f84e947be0022dbd7aa394a0b4…
[I 11:01:57.768 NotebookApp] Kernel started:
103ab68f-95af-4961-8f9d-3756f2192fd2
[I 11:01:58.401 NotebookApp] Adapting to protocol v5.1 for kernel
103ab68f-95af-4961-8f9d-3756f2192fd2
[INFO] [2019.7.13 11:2:4
/usr/local/miniconda/conda-bld/nest-simulator_1562094389587/work/nestkernel/rng_manager.cpp:217
@ Network::create_rngs_] : Creating default RNGs
[INFO] [2019.7.13 11:2:4
/usr/local/miniconda/conda-bld/nest-simulator_1562094389587/work/nestkernel/rng_manager.cpp:260
@ Network::create_grng_] : Creating new default global RNG
Assertion failed: (out != NULL), function execute, file
/usr/local/miniconda/conda-bld/nest-simulator_1562094389587/work/sli/sli_io.cc,
line 422.
[Filips-MacBook-Pro:31166] *** Process received signal ***
[Filips-MacBook-Pro:31166] Signal: Abort trap: 6 (6)
[Filips-MacBook-Pro:31166] Signal code: (0)
[Filips-MacBook-Pro:31166] [ 0] 0 libsystem_platform.dylib
0x00007fff791bfb3d _sigtramp + 29
[Filips-MacBook-Pro:31166] [ 1] 0 ???
0x0000000000000001 0x0 + 1
[Filips-MacBook-Pro:31166] [ 2] 0 libsystem_c.dylib
0x00007fff7907e1c9 abort + 127
[Filips-MacBook-Pro:31166] [ 3] 0 libsystem_c.dylib
0x00007fff79046868 basename_r + 0
[Filips-MacBook-Pro:31166] [ 4] 0 libsli.dylib
0x0000000110a01077 _ZNK18StrSStreamFunction7executeEP14SLIInterpreter + 759
[Filips-MacBook-Pro:31166] [ 5] 0 libsli.dylib
0x00000001109edb2e _ZN13FunctionDatum7executeEP14SLIInterpreter + 446
[Filips-MacBook-Pro:31166] [ 6] 0 libsli.dylib
0x00000001109ebe42 _ZN14SLIInterpreter8execute_Em + 466
[Filips-MacBook-Pro:31166] [ 7] 0 libsli.dylib
0x00000001109ebc58 _ZN14SLIInterpreter7startupEv + 40
[Filips-MacBook-Pro:31166] [ 8] 0 libnest.dylib
0x0000000110031ffa
_Z11neststartupPiPPPcR14SLIInterpreterNSt3__112basic_stringIcNS5_11char_traitsIcEENS5_9allocatorIcEEEE
+ 3306
[Filips-MacBook-Pro:31166] [ 9] 0 pynestkernel.so
0x000000010ffd5cb8
_ZL42__pyx_pw_12pynestkernel_10NESTEngine_5initP7_objectS0_S0_ + 3464
[Filips-MacBook-Pro:31166] [10] 0 python
0x00000001025a948a _PyCFunction_FastCallDict + 362
[Filips-MacBook-Pro:31166] [11] 0 python
0x000000010268042f call_function + 143
[Filips-MacBook-Pro:31166] [12] 0 python
0x000000010267dfc2 _PyEval_EvalFrameDefault + 46802
[Filips-MacBook-Pro:31166] [13] 0 python
0x00000001026807ec fast_function + 188
[Filips-MacBook-Pro:31166] [14] 0 python
0x000000010268048c call_function + 236
[Filips-MacBook-Pro:31166] [15] 0 python
0x000000010267dfc2 _PyEval_EvalFrameDefault + 46802
[Filips-MacBook-Pro:31166] [16] 0 python
0x0000000102671729 _PyEval_EvalCodeWithName + 425
[Filips-MacBook-Pro:31166] [17] 0 python
0x000000010266bf99 builtin_exec + 345
[Filips-MacBook-Pro:31166] [18] 0 python
0x00000001025a8dd2 PyCFunction_Call + 66
[Filips-MacBook-Pro:31166] [19] 0 python
0x000000010267e2b2 _PyEval_EvalFrameDefault + 47554
[Filips-MacBook-Pro:31166] [20] 0 python
0x0000000102671729 _PyEval_EvalCodeWithName + 425
[Filips-MacBook-Pro:31166] [21] 0 python
0x000000010268089a fast_function + 362
[Filips-MacBook-Pro:31166] [22] 0 python
0x000000010268048c call_function + 236
[Filips-MacBook-Pro:31166] [23] 0 python
0x000000010267dfc2 _PyEval_EvalFrameDefault + 46802
[Filips-MacBook-Pro:31166] [24] 0 python
0x00000001026807ec fast_function + 188
[Filips-MacBook-Pro:31166] [25] 0 python
0x000000010268048c call_function + 236
[Filips-MacBook-Pro:31166] [26] 0 python
0x000000010267dfc2 _PyEval_EvalFrameDefault + 46802
[Filips-MacBook-Pro:31166] [27] 0 python
0x00000001026807ec fast_function + 188
[Filips-MacBook-Pro:31166] [28] 0 python
0x000000010268048c call_function + 236
[Filips-MacBook-Pro:31166] [29] 0 python
0x000000010267dfc2 _PyEval_EvalFrameDefault + 46802
[Filips-MacBook-Pro:31166] *** End of error message ***
[I 11:02:06.763 NotebookApp] KernelRestarter: restarting kernel (1/5),
keep random ports
WARNING:root:kernel 103ab68f-95af-4961-8f9d-3756f2192fd2 restarted
[I 11:03:57.801 NotebookApp] Saving file at
/part1_NEST/0_hello_world.ipynb