Hello Alice,

Setting repeated recording windows is currently not possible (but maybe create a feature request on Github). What you can do is the following

n1 = nest.Create('iaf_psc_delta', params={'I_e': 1000.})

n2 = nest.Create('iaf_psc_delta')

wr = nest.Create('weight_recorder', params={'origin': 0., 'start': 0, 'stop': 1000})

nest.CopyModel('stdp_synapse', 'stdp_synapse_rec', {'weight_recorder': wr})

nest.Connect(n1, n2, syn_spec={'synapse_model': 'stdp_synapse_rec', 'weight': 20})

nest.Connect(n2, sr)

t_block = 5000

for k in range(10):

    wr.origin = k * t_block

    nest.Simulate(t_block)

This will simulate in 5s blocks and record weights only during the first 1s of each block. The actual recording windows are given by

(origin+start, origin+stop]. You need to do this with Simulate() calls since you need to change the origin parameter; therefore RunManager + run() does not work.

You could also record to file if that is an option for your workflow, by setting wr.record_to = 'ascii'. If you want to combine that with a loop, you need to set wr.label to a different value for each loop iteration, otherwise data will be overwritten for each round through the loop.

Best,

Hans Ekkehard

-- 

Prof. Dr. Hans Ekkehard Plesser

Head, Department of Data Science

Faculty of Science and Technology

Norwegian University of Life Sciences

PO Box 5003, 1432 Aas, Norway

Phone +47 6723 1560

Email hans.ekkehard.plesser@nmbu.no

Home http://arken.nmbu.no/~plesser

From: Alice Geminiani <alice.geminiani@polimi.it>
Reply to: NEST User Mailing List <users@nest-simulator.org>
Date: Friday, 11 November 2022 at 18:47
To: "users@nest-simulator.org" <users@nest-simulator.org>
Subject: [NEST Users] weight_recorder with large number of synapses

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Dear NEST users,

I am trying to record weights from a network with about 1.5 million synapses, for simulations of a 30-minute protocol, and using the weight_recorder causes memory errors. Is there a way to record only in specific time instants of the simulation (e.g. every 5 minutes)?

Thanks a lot!

Cheers,

Alice

----------------------------

Alice Geminiani, PhD

PostDoctoral Researcher

NeuroEngineering And medical Robotics Laboratory - NEARLab

Department of Electronics, Information and Bioengineering - DEIB

Politecnico di Milano

Neurocomputational laboratory

Department of Brain and Behavioral Sciences

University of Pavia