Dear Jochen,Thanks a lot, a giant step forward!I now get another error:Variable 'g_ex' not defined!
Ode equation lhs-variable 'g_ex$' not defined in state block!
Ode equation lhs-variable 'g_in$' not defined in state block!
Ode equation lhs-variable 'g_NMDA$' not defined in state block!
...AttributeError: 'NoneType' object has no attribute 'is_state'
While my state block contains:state:r integer = 0 # counts number of tick during the refractory periodV_m mV = E_L # membrane potential# inputs from the inhibitory conductanceg_in real = 0g_in$ real = g_I_const * (1 / tau_rise_GABA_A - 1 / tau_decay_GABA_A)# inputs from the excitatory conductanceg_ex real = 0g_ex$ real = g_E_const * (1 / tau_rise_AMPA - 1 / tau_decay_AMPA)# inputs from the excitatory NMDA conductanceg_NMDA real = 0g_NMDA$ real = g_NMDA_const * (1 / tau_rise_NMDA - 1 / tau_decay_NMDA)Any suggestions?Thanks,HedyehOn Wed, Aug 30, 2023 at 9:47 AM Jochen Martin Eppler <j.eppler@fz-juelich.de> wrote:Dear Hedyeh,
the
endkeyword has recently been removed from NESTML. You indicate blocks now solely by indentation as in Python.Cheers,Jochen!
On 30.08.23 08:42, Hedyeh Rezaei wrote:
Dear all,
I have installed nestml via conda and developed a code describing an LIF neuron with bi-exponential synaptic currents including NMDA, while the charge mediated by AMPA and NMDA receptors are not independent. When I try to compile the .nestml file, it gives me an error as:
from pynestml.frontend.pynestml_frontend import generate_nest_target
WARNING:root:PyGSL is not available. The stiffness test will be skipped.
WARNING:root:Error when importing: No module named 'pygsl'
In [2]: generate_nest_target(input_path="/home/hrezaei/neuron_model_NMDA.nestml",
...: target_path="/tmp/nestml-component",
...: logging_level="ERROR")
line 61:4 extraneous input 'end' expecting {DEDENT, 'function', 'state', 'parameters', 'internals', 'update', 'equations', 'input', 'output'}
line 63:4 extraneous input 'equations' expecting {<EOF>, NEWLINE, 'neuron', 'synapse'}
line 64:8 extraneous input ' ' expecting {<EOF>, NEWLINE, 'neuron', 'synapse'}
line 67:8 extraneous input 'kernel' expecting {<EOF>, NEWLINE, 'neuron', 'synapse'}
line 70:8 extraneous input 'kernel' expecting {<EOF>, NEWLINE, 'neuron', 'synapse'}
...
r"""Generate and build code for NEST Simulator.
Parameters
A dictionary containing additional options for the target code generator.
"""
I was wondering what the reason could be. I would appreciate it if you could help.
Thanks in advance.
Best,
Hedyeh
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-- Dr. Jochen Martin Eppler (he/him) Simulation and Data Lab Neuroscience Jülich Supercomputing Centre Institute for Advanced Simulation --------------------------------------------------------------------- Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Stefan Müller Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Dr. Ir. Pieter Jansens, Prof. Dr. Astrid Lambrecht, Prof. Dr. Frauke Melchior ---------------------------------------------------------------------_______________________________________________NEST Users mailing list -- users@nest-simulator.orgTo unsubscribe send an email to users-leave@nest-simulator.org_______________________________________________NEST Users mailing list -- users@nest-simulator.orgTo unsubscribe send an email to users-leave@nest-simulator.org