16 Mar
2023
16 Mar
'23
2:02 a.m.
Hello Charl and Beck,
I would be interested to join the discussion, as I am currently trying to
implement gap junctions too in an AdEx model with NESTML. Since maybe I'm
not the only one interested, could you post the meeting time and the zoom
details?
Best regards,
Razvan
On Thu, 16 Mar 2023 at 01:28, Beck Strohmer <bstrohmer(a)gmail.com> wrote:
Hi Charl,
Yes, I would greatly appreciate a deeper dive into this with you. Can you
write to me directly at bstrohmer(a)gmail.com so we can find a suitable
time? Thanks so much!
Best,
Beck
On Wed, Mar 15, 2023 at 3:07 PM Charl Linssen <nest-users(a)turingbirds.com>
wrote:
Hi, thanks very much for your inquiry!
To add a gap junction to a NESTML model, a few modifications to the
toolchain would be required. A first idea would be to add a new input port
with a type of "gap". If a gap junction port is present, we could then
generate the handler for a GapJunctionEvent, as well as to generate the
necessary code for the waveform relaxation mechanism in the update() method
of the neuron.
If you'd like to do a deeper dive into this together, I would be happy to
have a video call this week or the next (after that I will be in Marseille
for the HBP Summit). Please let me know what options would work best for
you.
Yours,
Charl
On Tue, Mar 14, 2023, at 11:10, bstrohmer(a)gmail.com wrote:
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Hi everyone, has anyone successfully added a gap
junction to an
existing model using NESTML? I would like to add gap junction support
to the aeif_cond_alpha neuron model but it is unclear how this can be
done within NESTML. As suggested by Charl, I started to look into
updating the jinja templates but I am not sure this will be possible
since both the input/output of the neuron and the model's equation must
be updated to support gap junctions. If anyone has any suggestions or
if anyone has NESTML code for adding a gap junction to an existing
model, I would be very appreciative. Thanks!
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