[NEST Users] Re: Problem with NEST 3.3 installation

Hi Steffen, We will try but next week. I am afraid that every update could cause some problems so we did not update recetly... Best,Petia On Friday, July 1, 2022 at 03:18:27 PM GMT+3, Steffen Graber <s.graber(a)fz-juelich.de> wrote: Hi Petia Thank you very much. I will have a look at it. However, Ubuntu 16.10 has reached the end of its life, and it is difficult to test. Is it possible to switch to a more up-to-date Ubuntu? Best Steffen Am 01.07.22 um 13:14 schrieb Petia Koprinkova: Hi Steffen, We have Ubuntu 16.10 operating system.  Python3 was installed following instructions on nest-simulator site (sudo apt install....).  I think we still have Python2 vesrion on the same computer. We also keep the older vesrion of NEST 2.18. Thank you in advance, Best, Petia On Friday, July 1, 2022 at 01:54:58 PM GMT+3, Steffen Graber <s.graber(a)fz-juelich.de> wrote: Hi Petia, I'm trying to reproduce the issue, but still lack some information:  Which operating system and version do you use? Which pytest version do you have installed? (The test seems to stumble over this). Has that been installed via PyPi or the package manager? And, is python2 still on your system? Sorry if something has already been answered in the correspondence and I have overlooked it. Best Steffen Am 01.07.22 um 11:59 schrieb Petia Koprinkova: Hi Dennis, We've just repeated all installation steps from  Installation from source without a virtual Python environment (link below) Running of make installcheck from the NEST 3.3 folder yelded the following result: Error: PyNEST testing requested, but 'pytest' cannot be run.        Testing also requires the 'pytest-xdist' and 'pytest-timeout' extensions. CMakeFiles/installcheck.dir/build.make:70: recipe for target 'CMakeFiles/installcheck' failed make[3]: *** [CMakeFiles/installcheck] Error 1 CMakeFiles/Makefile2:464: recipe for target 'CMakeFiles/installcheck.dir/all' failed make[2]: *** [CMakeFiles/installcheck.dir/all] Error 2 CMakeFiles/Makefile2:471: recipe for target 'CMakeFiles/installcheck.dir/rule' failed make[1]: *** [CMakeFiles/installcheck.dir/rule] Error 2 Makefile:179: recipe for target 'installcheck' failed make: *** [installcheck] Error 2 It seems the same as prvious one. Best, Petia On Wednesday, June 29, 2022 at 07:22:20 PM GMT+3, Dennis Terhorst <d.terhorst(a)fz-juelich.de> wrote: Hi Petia, this sound's a lot like an inconsistency in the Python setup. Did you choose the venv or the prefix path of https://nest-simulator.readthedocs.io/en/v3.3/installation/linux_install.ht… Are you running the `make installcheck` from the same location where the pytest-* are installed, i.e. consistently *in* the environment or *outside*? Best, Dennis On 29.06.22 14:37, Petia Koprinkova wrote: Hi Dennis, We've installed junitparser but again we do not have success: Executing NEST's testsuite... Error: PyNEST testing requested, but 'pytest' cannot be run.        Testing also requires the 'pytest-xdist' and 'pytest-timeout' extensions. CMakeFiles/installcheck.dir/build.make:70: recipe for target 'CMakeFiles/installcheck' failed make[3]: *** [CMakeFiles/installcheck] Error 1 CMakeFiles/Makefile2:464: recipe for target 'CMakeFiles/installcheck.dir/all' failed make[2]: *** [CMakeFiles/installcheck.dir/all] Error 2 CMakeFiles/Makefile2:471: recipe for target 'CMakeFiles/installcheck.dir/rule' failed make[1]: *** [CMakeFiles/installcheck.dir/rule] Error 2 Makefile:179: recipe for target 'installcheck' failed make: *** [installcheck] Error 2 Even though we have installed pytest-xdist and tytest-timeout extensions. Could you help us? Best, Petia On Wednesday, June 29, 2022 at 01:52:11 PM GMT+3, Dennis Terhorst <d.terhorst(a)fz-juelich.de> wrote: Hi, could you check if you have junitparser in your python environment? I saw a similar inexpressive error message when that package is missing. We need to fix the detection of junitparser in `testsuite/do_tests.sh`, the error message may not be printed. Best, Dennis On 29.06.22 12:33, Petia Koprinkova wrote: Hi, Could you help us with NEST 3.3. installation? The final (check) state give the following error: Executing NEST's testsuite... CMakeFiles/installcheck.dir/build.make:70: recipe for target 'CMakeFiles/installcheck' failed make[3]: *** [CMakeFiles/installcheck] Error 1 CMakeFiles/Makefile2:446: recipe for target 'CMakeFiles/installcheck.dir/all' failed make[2]: *** [CMakeFiles/installcheck.dir/all] Error 2 CMakeFiles/Makefile2:453: recipe for target 'CMakeFiles/installcheck.dir/rule' failed make[1]: *** [CMakeFiles/installcheck.dir/rule] Error 2 Makefile:179: recipe for target 'installcheck' failed make: *** [installcheck] Error 2 We have Ubuntu desctop with installed NEST 2.18 and it works. But for some reason NEST 3.3. failed. Best regards, Petia Koprinkova-Hristova _______________________________________________ NEST Users mailing list -- users(a)nest-simulator.org To unsubscribe send an email to users-leave(a)nest-simulator.org -- Dipl.-Phys. Dennis Terhorst Coordinator Software Development Institute of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience & Theoretical Neuroscience, Institute for Advanced Simulation (IAS-6) Jülich Research Centre, Member of the Helmholz Association and JARA 52425 Jülich, Germany Building 15.22 Room 4004 Phone +49 2461 61-85062 Fax +49 2461 61- 9460 d.terhorst(a)fz-juelich.de ---------------------------------------------------------------------- Forschungszentrum Juelich GmbH, 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Frauke Melchior ---------------------------------------------------------------------- _______________________________________________ NEST Users mailing list -- users(a)nest-simulator.org To unsubscribe send an email to users-leave(a)nest-simulator.org _______________________________________________ NEST Users mailing list -- users(a)nest-simulator.org To unsubscribe send an email to users-leave(a)nest-simulator.org -- Dipl.-Phys. Dennis Terhorst Coordinator Software Development Institute of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience & Theoretical Neuroscience, Institute for Advanced Simulation (IAS-6) Jülich Research Centre, Member of the Helmholz Association and JARA 52425 Jülich, Germany Building 15.22 Room 4004 Phone +49 2461 61-85062 Fax +49 2461 61- 9460 d.terhorst(a)fz-juelich.de ---------------------------------------------------------------------- Forschungszentrum Juelich GmbH, 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Frauke Melchior ---------------------------------------------------------------------- _______________________________________________ NEST Users mailing list -- users(a)nest-simulator.org To unsubscribe send an email to users-leave(a)nest-simulator.org _______________________________________________NEST Users mailing list -- users(a)nest-simulator.orgTo unsubscribe send an email to users-leave(a)nest-simulator.org -- ------------------------------------------------------------------------------------- Steffen Graber Institute of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience & Institute for Advanced Simulation (IAS-6) Theoretical Neuroscience & JARA Institute Brain Structure-Function Relationships (INM-10) Forschungszentrum Jülich GmbH http://www.csn.fz-juelich.de SDL Neuroscience Division HPC in Neuroscience Jülich Supercomputing Centre Institute for Advanced Simulation Forschungszentrum Jülich GmbH E-mail: s.graber(a)fz-juelich.de Phone: +49 2461 61 85457 http://www.fz-juelich.de/ias/jsc --------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------- Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr. Astrid Lambrecht, Prof. Dr. Frauke Melchior --------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------- _______________________________________________ NEST Users mailing list -- users(a)nest-simulator.org To unsubscribe send an email to users-leave(a)nest-simulator.org _______________________________________________ NEST Users mailing list -- users(a)nest-simulator.org To unsubscribe send an email to users-leave(a)nest-simulator.org -- ------------------------------------------------------------------------------------- Steffen Graber Institute of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience & Institute for Advanced Simulation (IAS-6) Theoretical Neuroscience & JARA Institute Brain Structure-Function Relationships (INM-10) Forschungszentrum Jülich GmbH http://www.csn.fz-juelich.de SDL Neuroscience Division HPC in Neuroscience Jülich Supercomputing Centre Institute for Advanced Simulation Forschungszentrum Jülich GmbH E-mail: s.graber(a)fz-juelich.de Phone: +49 2461 61 85457 http://www.fz-juelich.de/ias/jsc --------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------- Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr. Astrid Lambrecht, Prof. Dr. Frauke Melchior --------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------- _______________________________________________ NEST Users mailing list -- users(a)nest-simulator.org To unsubscribe send an email to users-leave(a)nest-simulator.org